NAME
gbseqget - format sequences from GenBank as an XML GBSet
SYNOPSIS
gbseqget [-] [-d filename] [-i filename] [-m n/p/b] [-n] [-o filename] [-v]
DESCRIPTION
gbseqget retrieves biological sequence data from GenBank (according to an input list of GI accession numbers) and prints it out as an XML GBSet document.
OPTIONS
A summary of options is included below.
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- |
Print usage message |
-d filename
Input file name for date list (desired accessions, one per line, followed by a blank line and a list of allowed dates, also one per line)
-i filename
Input file name for GI list (default = stdin)
-m n/p/b
Molecule type:
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n |
Nucleotide (default) |
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p |
Protein |
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b |
Both |
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-n |
Return only new records (for which the given GI refers to an old version)
-o filename
Output file name for the XML GBSet (default = stdout)
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-v |
Fetch SNP Variations |
NOTES
The GBSet format is deprecated in favor of INSDSet, which you can produce by running insdseqget in place of gbseqget.
AUTHOR
The National Center for Biotechnology Information.