NCBI "NCBI Entrez Direct User’s Manual"
NAME
efilter - filter and/or sort NCBI Entrez search results
SYNOPSIS
efilter [-help] [-query str] [-days N] [-datetype field] [-mindate date] [-maxdate date] [-pub type] [-journal name] [-released when] [-country name] [-feature type] [-location type] [-molecule type] [-organism type] [-source type] [-division code] [-keyword purpose] [-purpose why] [-status alive] [-type type] [-class class]
DESCRIPTION
efilter filters and/or sorts results from a previous Entrez Direct search.
OPTIONS
Query
Specification
-query str
Limit results to those matching the given query string.
Date
Constraint
-days N
Keep only results from the past N days.
-datetype field
Which date field (in abbreviated form) to consider.
-mindate date
Start of date range.
-maxdate date
End of date range.
Publication
Filters
-pub type
abstract, clinical, english, free, historical, journal, medline, preprint, published, retracted, retraction, review, or structured.
-journal name
pnas, "j bacteriol", ...
-released when
last_week, last_month, last_year, or prev_years.
Sequence
Filters
-country name
usa:minnesota, united_kingdom, "pacific ocean", ...
-feature type
gene, mrna, cds, mat_peptide, ...
-location type
mitochondrion, chloroplast, plasmid, or plastid.
-molecule type
genomic, mrna, trna, rrna, or ncrna.
-organism type
animals, archaea, bacteria, eukaryotes, fungi, human, insects, mammals, plants, prokaryotes, protists, rodents, viruses, ...
-source type
genbank, insd, pdb, pir, refseq, select, swissprot, or tpa.
-division code
Three-letter GenBank division code: bct, con, env, est, gss, htc, htg, inv, mam, pat, phg, pln, pri, rod, sts, syn, una, vrl, or vrt.
-keyword purpose
-purpose why
baseline or targeted.
Gene Filters
-status alive
-type type
coding or pseudo.
SNP Filters
-class class
acceptor, donor, coding, frameshift, indel, intron, missense, nonsense, or synonymous.
Assembly
Filters
-status status
latest or replaced.
Miscellaneous Arguments
|
-help |
Print usage information. |
SEE ALSO
combine-uid-lists(1), difference-uid-lists(1), esearch(1), nquire(1), exclude-uid-lists(1), intersect-uid-lists(1).