NAME
archive-pmc - maintain a local NCBI PubMed Central archive
SYNOPSIS
archive-pmc [[-]daily|[-][re]index] [[-]clean|[-]clear|[-]scrub] [[-]zap] [[-path] dir [[-temp|-work[ing]] dir]]
DESCRIPTION
archive-pmc prepares a directory to hold a local PubMed Central archive, then downloads a full database dump from NCBI’s servers, organizes the dump into an rchive(1) trie, and refreshes the versioned records.
OPTIONS
[-]daily
Additionally produce or update an inverted index.
[-][re]index
Fully reindex, complete with an inverted index.
[-]clean|[-]clear
Delete Indices contents and Increment files.
[-]scrub
Delete Indices contents, Increment files, and Postings directories.
|
[-]zap |
Delete entire archive. |
[-path] dir
Place the local archive in dir.
[-temp|-work[ing]] dir
Place intermediate subtrees in dir.
ENVIRONMENT
EDIRECT_PMC_MASTER
Local archive directory to use in the absence of -path. Expected to hold an absolute path; mandatory when not supplying a path on the command line.
EDIRECT_PMC_WORKING
Directory to hold intermediate subtrees in the absence of -temp|-work[ing]. Expected to hold an absolute path. Defaults to the primary local archive directory when not set.
SEE ALSO
archive-pubmed(1), download-pmc(1), fetch-pmc(1), rchive(1), xtract(1).